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Finding the signs of disease before symptoms begin

How new capabilities from Thermo Fisher Scientific are unlocking the secrets stored in biobanks and revealing insights into human health once beyond scientists’ reach



By Terri Somers

Senior Manager, Global PR and StoryLab

INSIDE research centers around the world, row after row of upright ultra-low-temperature freezers hum. Behind their heavily insulated doors, at roughly minus 80 degrees Celsius, metal racks hold boxes filled with tiny, barcoded tubes. A single freezer can hold more than 100,000 samples of blood, plasma, tissue and other biological materials in individual tubes. Some have been there for decades.

 

Each belongs to someone whose life continued after that sample was collected. Some remained healthy. Others developed cancer, heart disease, diabetes or dementia years later. Some responded to medicines; others didn't. And as their lives unfolded, scientists gained something they didn't have when the blood was drawn: the rest of the story.

 

Collections like these - biological samples linked to information about the people who provided them - are known as biobanks.

 

"A biobank is very much a collection of stories and narratives," said David Brazel, Ph.D., vice president of data sciences at Octave Bioscience.

Biobanks have existed in various forms for generations. What's different now is what scientists can learn from them. Advances in genomics, proteomics, computing, analytics and AI let researchers return to samples collected years ago and uncover clues they couldn't see before. The discoveries are convincing governments and health systems around the world to invest in a new generation of them.



What is a biobank?

A biobank is a collection of biological samples, such as blood, plasma or tissue, linked to information about the people who provided them. As more health data becomes available and scientific technologies advance, researchers can revisit these samples to uncover biological signals that were undetectable when they were first collected.


Today, researchers can look across thousands of samples for clues that repeat - the same proteins, for example, behaving differently in people who later develop the same disease. Then they can return to a single tube and the person behind its barcode and ask: Was the warning already there?

 

Increasingly, the answer is yes.


What have biobanks revealed?

Scientists have found biological signals associated with disease.

7+ years

Before cancer diagnosis

10+ years

Before dementia diagnosis

Using Thermo Fisher Scientific’s Olink™ technology to analyze blood donated to UK Biobank, researchers have found proteins associated with cancer more than seven years before diagnosis. Another study found protein changes that could predict dementia more than a decade before diagnosis. They show what is becoming possible: finding traces of illness before a person knew anything was wrong.

Why do biobanks become more valuable over time?


The roots of modern biobanking stretch back at least to the Framingham Heart Study. Beginning in 1948, 5,209 men and women from the small Massachusetts town - more than half its adult population - volunteered to have researchers follow their health over time. Nearly eight decades later, the study spans three generations of participants. It helped establish smoking, high blood pressure and high cholesterol as major cardiovascular risk factors and continues to yield new insights into human health.

The audacity of the study is easier to appreciate in retrospect. It began five years before scientists described DNA's double-helix structure, long before researchers could have imagined many of the capabilities now used to interrogate human biology.

That long horizon still shapes biobanking. Chase Heibel, general manager of Thermo Fisher's ultra-low-temperature freezer business, says his colleagues still find freezer models operating at customer sites that the company stopped manufacturing 30 years ago.

Three generations of Framingham Heart Study participants Three generations of Framingham Heart Study participants.

"There's a little bit of a Field of Dreams mentality when establishing a new biobank. You know, if you build it, then they will come," said Christopher Whelan, Ph.D., a geneticist and neuroscientist, who later founded the UK Biobank Pharma Proteomics Project, an industry consortium created to measure thousands of proteins in tens of thousands of UK Biobank participants. Scientists understood that such samples would one day be valuable, he said, but "it's probably impossible to predict just how valuable they turned out to be."

What can proteomics reveal that genomics can’t?

One of the first breakthroughs came when scientists gained powerful new ways to compare genetic variation across thousands - and eventually hundreds of thousands - of people.

 

UK Biobank supercharged that search. Beginning in 2006, it recruited about 500,000 people and later used Affymetrix® genotyping arrays, technology now part of Thermo Fisher, to scan genetic variation across nearly the entire cohort.

 

But those genetic discoveries also exposed how much scientists still couldn't see.

 

"We couldn't reliably map the present tense," Whelan said.


Genomics

Examines genetic variation

Largely fixed throughout life

Can reveal disease predisposition

One layer of biology

 

 

Proteomics

Examines proteins

Dynamic and changing

Can reflect current biological state

A complementary layer

 

 

 


DNA can reveal that someone was born with a higher risk of developing a disease. But a person's genetic code is largely fixed throughout life. It can't necessarily tell researchers what's happening inside that person's body today.

 

That question opened another window: proteomics, the study of thousands of proteins at a time. Proteins are the molecules that perform most functions in living systems. They build and maintain cells, carry signals between cells, regulate the immune system, and help shape whether disease advances or stalls. Protein levels can change with age, disease, diet, infection, environmental exposures and immune responses.

"The protein level is really an aggregation of additional factors that can truly be reflective of the state of disease and health," said Yan Zhang, Ph.D., president, proteomic sciences at Thermo Fisher.

The tools for searching that layer of biology have advanced rapidly.

Technologies from Thermo Fisher’s Olink™ can measure thousands of known proteins from tiny amounts of blood, while increasingly powerful mass spectrometry lets researchers search even more broadly for proteins they may not already know to seek.

Together with advances in computing and analytics, those capabilities allow scientists to cast a much wider net and see what unexpected patterns emerge.

"That gives you the power to discover new things that you didn't think about before," Zhang said.

Yan Zhang, Ph.D., president, proteomic sciences at Thermo Fisher Scientific Yan Zhang, Ph.D., president, proteomic sciences at Thermo Fisher Scientific.

Why is a new generation of biobanks emerging?

There was a time, recalled John Chambers, MBBS, Ph.D., chief scientific officer of PRECISE, which leads Singapore's National Precision Medicine program, when some in the scientific community wondered whether the world needed more resources like UK Biobank: "We've got UK Biobank. That's enough."

 

Not anymore.

 

"Now, there's a real excitement," Chambers said. "Let's do more."

 

The reason isn't simply to collect more samples. Different populations can reveal different biology. What people eat, where they live and the environments and exposures they encounter can leave traces in their proteins, potentially revealing disease clues that studies elsewhere might miss.

 

"Governments are starting to see biobanks not simply as research projects, but as investments in the health of their populations, investments that could help people live longer, healthier lives while ultimately reducing the cost of care," said Tim Fenton, vice president of government relations at Thermo Fisher.

Around the world, governments are building and expanding population-health and biobank infrastructure.

Thermo Fisher is involved in efforts including UK Biobank and Our Future Health in the United Kingdom, FinnGen in Finland, and Geisinger's MyCode Community Health Initiative in the United States.

In South Korea, researchers are using Thermo Scientific™ Orbitrap™ Astral™ mass spectrometry in a 20,000-sample proteomics study seeking biomarkers for earlier cancer detection in young adults.

The Thermo Scientific™ Orbitrap™ Astral™ mass spectrometer The Thermo Scientific™ Orbitrap™ Astral™ mass spectrometer

Singapore's SG100K population study shows why another population can add something new. The study is following more than 100,000 people, including Asian populations historically underrepresented in large biomedical datasets, to better understand how lifestyle, environmental and other factors contribute to diseases such as diabetes, hypertension and cancer. Thermo Fisher is collaborating with PRECISE to apply Olink™ proteomics and the Thermo Scientific™ Orbitrap™ Astral™ mass spectrometer to that search.

 

"The big-ticket item ... is the missed opportunities for discovery," Chambers said of the need for greater diversity. "Discoveries that don't just benefit Asia but benefit the world."

 

Modern biobanks are also becoming more than banks.

 

"The traditional biobank design is a single snapshot of observation," Chambers said. Newer programs can keep learning as participants' health, diets, environments and exposures change.

 

PRECISE is pushing that evolution one step further by deliberately connecting discovery with healthcare.

 

"What is unique about what we've done is seeing that there was a translational gap previously in cohort work and we bonded those two things together," Chambers said.

From 1,400 proteins to a decision in the exam room


Ultimately, translating this science into medicine means making a discovery matter to one patient.

"Imagine being a multiple sclerosis patient, you're kind of living a life of a mystery," said Doug Biehn, MBA, CEO of Octave Bioscience. "You have no idea what's going on inside of you until something bad happens that you could feel it, or you could see it, or be captured on an MRI."

MS can cause damage even without obvious new symptoms. An MRI, Biehn said, is "a picture of the past." Octave sought objective information about what may be happening biologically inside a patient now.

The journey began by measuring roughly 1,400 proteins in samples from people with MS. Using Olink technology, researchers searched broadly for combinations of biological signals associated with disease activity, including activity that might otherwise be unfolding "invisibly behind the scenes."

Doug Biehn, CEO of Octave Bioscience Doug Biehn, CEO of Octave Bioscience

"Those improvements were absolutely essential to the creation of MSDA," Brazel said, referring to Octave's Multiple Sclerosis Disease Activity Test, a blood test that uses 18 proteins to assess disease activity. Octave worked with Olink™ from the broad protein search through development of the focused panel. "Without that, we could not have found the proteins that make up the MSDA panel."

But identifying those 18 proteins wasn't enough.

"It's always a good idea to have a healthy dose of paranoia of your own work," Brazel said. The proteins had to survive biological, analytical and clinical validation across different patients and treatments.

Then came another problem.

"Imagine giving a physician absolute values of 18 proteins," Biehn said. "What are we going to do with that?"

David Brazel, Ph.D., vice president of data sciences at Octave Bioscience David Brazel, Ph.D., vice president of data sciences at Octave Bioscience

Machine learning helps combine those signals into interpretable scores. Brazel describes the goal as making "the complexity of biology digestible for a patient and clinician when they're sitting in an exam room making a difficult decision."

 

For Biehn, it represents "the big shift" in medicine: "moving from the subjective reactive to the quantitative proactive."

 

A recent study found that the MSDA Test could help identify MRI-confirmed active disease in patients with new symptoms, giving physicians another clue to distinguish a true relapse from other causes.

 

"Now it's a shared decision-making situation versus a trial-and-error situation," Biehn said.

 

Such biological signals are called biomarkers. Properly validated, they can become early warnings, diagnostics or treatment guides, and can reveal drug targets that ultimately lead to new medicines.

Could biobanks help shift medicine from treatment to prevention?


Every new scientific capability seems to answer one set of questions and expose another.

 

Genomics revealed both the power and the limits of what scientists could learn from DNA. Proteomics opened another window. Now researchers are looking at biology with still greater resolution, down to individual cells and their surroundings.


This proteomics moment isn't driven by just one technology. Olink™ technology can compare thousands of known proteins across tens of thousands of people. Once scientists find something promising, more focused Olink™ tests can help them investigate those proteins more precisely as they explore whether a discovery could eventually become useful in patient care. Increasingly powerful mass spectrometry complements that approach by casting an even wider net, searching for proteins researchers may not already know to seek.

Chambers marvels at the amount of biological information researchers can now extract from minute amounts of material using Thermo Fisher’s mass spectrometry.

"The guys who design that technology," he said, "I mean, it's just awesome."

He compares the shift in mass spectrometry to what happened when genetics moved from scanning predetermined locations in DNA to whole-genome sequencing: researchers no longer had to know beforehand exactly what they were looking for.

"Whatever it is that's there, even if I've never heard of it before and never anticipated it, we have a chance to detect it," Chambers said.

For Chambers, the real significance is not simply how much scientists can measure today, but how much further that capability could take discovery.

"I'm so excited about the future because these technologies are going to continue to evolve," Chambers said. "Man, it's just the beginning."

.John Chambers, MBBS, Ph.D., chief scientific officer of PRECISE. John Chambers, Ph.D., chief scientific officer of PRECISE

Whelan has watched that cycle before: genomics revealed questions genetics couldn't answer and helped propel scientists toward proteomics. Now proteomics is exposing the next set of questions.

 

The destination isn't simply more data.

 

"I think ultimately we'll move from disease treatment to disease prevention," Whelan said. His hope is that molecular measurements will one day allow doctors to spot changes in healthy people early enough to intervene before disease takes hold.

 

Zhang imagines that future becoming remarkably ordinary: a routine physical could someday include proteomics alongside familiar blood measurements. "I may not necessarily just call it a biobank anymore," she said. "Biobank is what gets us started."

 

Perhaps the strongest evidence of the optimism surrounding that future isn't found in a laboratory at all.

 

In Singapore, Chambers said, what resonated most with potential SG100K participants was the possibility of improving life for their children, grandchildren and future generations. PRECISE now has roughly two years' worth of people waiting to participate.

 

“We found that what really motivates people is the emphasis that we’re trying to make a better future,” he said. 


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